Quick PDFS/Forms

Analysis Resources

• Applied Bioinformatics Core
• WCM Library Bioinformatics Service
• methylKit and eDMR (Differential methylation analysis)
• ChIPseeqer (ChIP-Seq analysis)
• GobyWeb (NGS analysis)
• Galaxy (NGS analysis)
• featureCounts (Read summarization)
• DESeq (RNA-Seq analysis)
• A survey of best practices for RNA-seq data analysis (RNASeq anaylsis review paper)
• bedtools (genome analysis)
• IGV (Integrative Genomics Viewer)
• UCSC genome browser
• FASTQC (Quality control)
• FASTX Toolkit (Quality control)
• Computational Tools at Broad Institute
• Cytoscape (Network visualization)
• BaseSpace (Illumina)
• Epigenome Roadmap (Nature papers)
• SEQanswers (NGS related forum)
• SEQanswers Wiki and Software Hub
• Statistics for biologists (Nature.com collection)